Plot the threshold for for each marker expression as per determined by DefineNegatives

Plot the threshold for for each marker expression as per determined by DefineNegatives

Usage

PlotDefineNegatives(
  x,
  y_axis_var = NULL,
  output = FALSE,
  outputFile = "DefineNegativePlot.pdf",
  panel = NULL
)

Arguments

x

A FlowObject.

y_axis_var

The variable to use for the y-axis in the generated plots, or 'Density' to use a density plot.

output

If TRUE, plots are generated as a file. The default is FALSE and shows plots in X window.

outputFile

When output is TRUE, this defines the filename of the output file.

panel

The number of panels to be included. If NULL, all panels are included in the output plot.

Value

The same FlowObject is returned for safety.

See also

Other Data Transformation: DefineNegatives(), LogData(), NormAF(), PlotNormAF()

Examples

if (FALSE) { # \dontrun{
PlotDefineNegatives(x)
} # }