Plot Delta Enrichment or Interaction Effects for Each Marker Using Pruned GatingTree

Plot Delta Enrichment or Interaction Effects for Each Marker Using Pruned GatingTree

Usage

PlotDeltaEnrichmentPrunedTree(x, q = 0)

Arguments

x

FlowObject after applying PruneGatingTree.

q

A numeric value between 0 and 1 as a quantile threshold for extracting top markers.

Value

Returns the object `x` with statistical values

Details

The function conducts Kruskal-Wallis tests to determine the significance of differences across markers, followed by Dunn's test for post-hoc analysis with Bonferroni correction if significant.

See also

Other GatingTree: ExtractGatingTree(), GatingTreeToDF(), PlotDeltaEnrichment(), PruneGatingTree(), createGatingTreeObject(), findNodeByPath(), getNode()

Examples

if (FALSE) { # \dontrun{
  x <- PlotDeltaEnrichmentPrunedTree(x)
} # }