Plot Delta Enrichment or Interaction Effects for Each Marker Using Pruned GatingTree

Plot Delta Enrichment or Interaction Effects for Each Marker Using Pruned GatingTree

Usage

PlotDeltaEnrichmentPrunedTree(x)

Arguments

x

FlowObject after applying PruneGatingTree.

Value

Returns the object `x` with statistical values

Details

The function conducts Kruskal-Wallis tests to determine the significance of differences across markers, followed by Dunn's test for post-hoc analysis with Bonferroni correction if significant.

See also

Other GatingTree: GatingTreeToDF(), PlotDeltaEnrichment(), PruneGatingTree(), addChildNode(), add_prune(), apply_gating_conditions(), baseline_entropy(), calculate_enrichment(), calculate_entropy(), collect_all_enrichment(), collect_all_entropy(), collect_history(), collect_leaf_enrichment(), collect_markers(), convertToDataTree(), convert_to_diagrammer(), count_nodes(), createChildNode(), createGatingTreeObject(), findNodeByPath(), find_and_update_nodes(), gating_entropy(), general_node_rule(), generate_marker_names(), getNode(), prune_tree(), recursiveAddChildNode()

Examples

if (FALSE) { # \dontrun{
  x <- PlotDeltaEnrichmentPrunedTree(x)
} # }