Generate CCA heatmap plots for Tocky data (Timer-Blue vs Timer-Red 2d plots)

Usage

BiplotCCA(
  x,
  ncol = 2,
  nrow = 1,
  jpeg = FALSE,
  select = FALSE,
  colour = "Spectral",
  xlim = NULL,
  ylim = NULL,
  max_cells_displayed = 30000,
  verbose = FALSE
)

Arguments

x: A TockyPrepData object produced by the function Tocky
ncol: The number of columns in plot
nrow: The number of rows in plot
jpeg: A logical argument. If FALSE, it will open a device window in which plots are generated.
select: Whether to interactively select markers to be processed. If FALSE, all the log-transformed markers apart from Timer fluorescence (stored in the TockyPrepData) will be used.
colour: Either 'Spectral' or 'BlueRed' for Angle colour key.
xlim: Optional x-axis limits.
ylim: Optional y-axis limits.
max_cells_displayed: The maximum number of cells to display in the plots
verbose: Logical indicating whether to print progress messages and outputs.

Value

Generates a CCA heatmap plot and optionally saves it as a jpeg file.

Examples

if (FALSE) { # \dontrun{
BiplotCCA(x)
} # }