Package index • TockyDevelopment

All functions

BiplotCCA(): Generate CCA heatmap plots for Tocky data (Timer-Blue vs Timer-Red 2d plots)

DijkstraTockyPath(): Dijkstra-Tocky Pathfinding

GetStatsClusterPercentage(): Retrieve Cluster Percentage Data and Stats

PlotClusterPercentage(): Plot Cluster Percentage by Bar plot

PlotDimRedLoading(): Set a gate to define negative (and positive) for each marker expression

PlotPCAHeatmap(): Generate PCA heatmap plots for Tocky data (Timer-Blue vs Timer-Red 2d plots)

PlotTockyCCA(): Generate CCA heatmap plots for Tocky data (Timer-Blue vs Timer-Red 2d plots)

PlotTockyClustering(): Plot Tocky Clusters

PlotTockyNetwork(): Plot A Tocky Network

PlotTockyPCA(): Produce PCA plot

TockyCCA(): Perform Dimensional Reduction using Canonical Correspondence Analysis (CCA) for TockyPrepData.

TockyClustering(): Clustering Cells Using Dimensional Reduction by TockyPCA.

TockyNetwork(): Produce A Network of Tocky Clusters

TockyPCA(): Perform Principal Component Analysis for TockyPrepData.

plot_color_code(): To produce colour key as a gradient rectangle

showDijkstraTockyPath(): Display Closest Tocky Angle Gradient Path