Produce scatter plots of percentages of cells in each Tocky Locus.

Usage

plotTockyLocus(
  x,
  percentTimer = FALSE,
  group_order = NULL,
  locus_colours = NULL,
  group_colors = NULL,
  group_by = TRUE,
  p_adjust_method = "fdr",
  ylim = NULL,
  stats = TRUE,
  verbose = TRUE
)

Arguments

x: A TockyPrepData object
percentTimer: A logical value for whether Percent Timer data is produced. Default is FALSE and produces Percent Parent data.
group_order: The order of groups (optional).
locus_colours: (optional) to choose colours for Tocky Loci.
group_colors: (optional) to choose colours for groups.
group_by: A logical value for whether different groups are plotted in different panels.
p_adjust_method: A method for p-value adjustment in statistical tests.
ylim: (Optional) the range of y values to be displayed.
stats: A logical value for whether to produce statistical outputs. This is effective only for two-group analysis.
verbose: Logical indicating whether to print Tocky Locus stats. Default is TRUE.

Value

A ggplot object

Examples

if (FALSE) { # \dontrun{
plotTockyLocus(x)
} # }