Generate basic QC plots for Tocky data (Timer-Blue vs Timer-Red 2d plots) — plot_tocky_locus • TockyLocus

This function creates quick control plots for the TockyPrepData object analyzing fluorescence changes over time in cellular activities.

Usage

plot_tocky_locus(
  x,
  file = "PlotTockyLocus",
  n = 3,
  max_cell_number = 20000,
  viridis = FALSE,
  interactive = FALSE
)

Arguments

x: A TockyPrepData object produced by the function prep_tocky.
file: The name of the output file.
n: The number of plots per row and column in the output grid.
max_cell_number: The maximum number of cells to be displayed per panel.
viridis: (Optional). If TRUE, a colour-blind friendly colour set is used.
interactive: (Optional). If TRUE, an interactive session is used to trim plot area.

Value

An unchanged TockyPrepData object, primarily for consistency in pipeline usage.

Examples

if (FALSE) { # \dontrun{
plot_tocky_locus(data)
} # }