S4 Class to hold mCanonicalTockySeq Results

S4 Class to hold mCanonicalTockySeq Results

Slots

X

Matrix. The single-cell expression matrix (Genes x Cells), accepts either dense or sparse matrices.

Z

matrix. The reference landmark matrix (Genes x Vectors).

metadata

data.frame. Cell-level metadata.

genes

character. The features used for the RDA.

expression_scores

data.frame. Gene loadings.

fitted_cell_scores

data.frame. Fitted cell scores.

cell_scores

data.frame. Projected cell scores.

biplot

data.frame. Constraint vectors.

marker_info

list. Provenance of landmarks.

TockyData

data.frame. Gradient mapping and lineage trajectory results.