Package index
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LaunchTocky3DApp() - Launch Interactive 3D Fate Explorer App
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mCanonicalTockyObj-class - S4 Class to hold mCanonicalTockySeq Results
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mCanonicalTockySeq() - Canonical Redundancy Analysis for Tocky Differentiation
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mExtractTrajectoryTubes() - Extract Independent Biological Trajectory Tubes
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mGetFateScores() - Calculate Fate Commitment Scores
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mGradientTockySeq() - Gradient Tocky Sequence (Slerp Model)
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mPlotCanonicalTocky() - Plot Canonical Tocky Ordination with Continuous Gradient Legend
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mPlotGeneDynamics() - Plot Gene Expression Dynamics by Group
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mPlotTockyHeatmap() - Plot Tocky-Time Heatmap
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mProjectCanonicalTocky() - Project New ScRNA-seq Data into an Established Canonical Tocky Space
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mRunTradeSeqTocky() - Run TradeSeq Differential Dynamics Analysis (Optimized for 2 Lineages)
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plotLineageGeneDynamics() - Plot Gene Dynamics Trends Along Trajectory Tubes
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plotTockyFate2D() - Plot 2D Fate Space Maturation
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plotTockyFate3D() - Plot Smooth 3D Fate Trajectory (Expression-Anchored)
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plotTockyLocusFeatures() - Plot Canonical Tocky Locus Features
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show(<mCanonicalTockyObj>) - Show method for mCanonicalTockyObj