Project New ScRNA-seq Data into an Established Canonical Tocky Space — mProjectCanonicalTocky • mCanonicalTockySeq

Performs Redundancy Analysis (RDA) on a new expression matrix (e.g., human orthologs) using the exact explanatory variable matrix (Z) and internal mappings from a reference Tocky model (e.g., mouse).

Usage

mProjectCanonicalTocky(X_mat, ref_obj, seurat_obj, ...)

# S4 method for class 'Matrix'
mProjectCanonicalTocky(X_mat, ref_obj, seurat_obj, scale_Z = TRUE)

Arguments

X_mat: A Matrix (dense or sparse) of expression data for the new dataset.
ref_obj: The reference mCanonicalTockyObj.
seurat_obj: The Seurat object corresponding to the cells in X_mat.
...: Additional arguments passed to methods.
scale_Z: Logical. Whether to scale the Z matrix (default TRUE).

Value

An mCanonicalTockyObj containing the projected cells.