Generates an interactive 3D Plotly visualization of cells flowing through Tocky Time alongside dynamically calculated LOESS-smoothed lineage paths. Automatically detects biologically anchored tubes generated by mExtractTrajectoryTubes().
Usage
plotTockyFate3D(object, ...)
# S4 method for class 'mCanonicalTockyObj'
plotTockyFate3D(
object,
color_by = "time",
window_size = 10,
step_size = 1,
span = 0.4
)Arguments
- object
An mCanonicalTockyObj with fate scores and extracted tubes in @TockyData.
- ...
Additional arguments passed to methods.
- color_by
Character. Either "time" (default) or "lineage".
- window_size
Numeric. Width of the sliding angle slice (default 10).
- step_size
Numeric. Step size for the sliding window (default 1).
- span
Numeric. LOESS smoothing span (default 0.4).