Package index • TockyConvNetR

All functions

ImageConversion(): Image Conversion for Direct Export of Samples

convert_to_image(): Convert Data to Image Matrices

getImages(): Get CNN Images from TockyPrepData Object

inverseGradCAM(): Integrated Grad-CAM Feature Cell Identification

plotGradCAMFeatureCells(): Generate Plots for Analysing Feature Cell Abundance

plotGradCAMFeatureMFI(): Generate a boxplot of MFI (median fluorescence intensity) for Grad-CAM feature cells, other Timer+ cells, and Timer negative cells following inverseGradCAM.

plotInverseGradCAM(): Plot GradCAM (or Heatmap) Values in Original Flow Cytometry Plot

writeImages(): Export TockyCNN Image Data from TockyPrepData Object