Package index

All functions

CanonicalTockySeq()

Canonical Redundancy Analysis for Tocky Differentiation using single-cell RNA-sequencing data (CanonicalTockySeq)

GradientTockySeq()

Gradient Tocky Sequence (Slerp Model)

PlotTockyHeatmap()

Plot Pseudotime Heatmap (Ordered by Peak Timing)

RunTradeSeqTocky()

Run TradeSeq Differential Dynamics Analysis on Tocky Trajectory

SelectTockyGenes()

Select Genes Dynamic along Tocky Time

plotCanonicalTocky()

Plot Canonical Tocky Ordination with Continuous Gradient Legend

plotGeneDynamics()

Plot Gene Expression Dynamics by Group (Fixed Color Mapping & Robust Limits)