Add Prune Markers to Nodes — add_prune • GatingTree

This function recursively adds prune markers to nodes of a tree based on specific conditions related to enrichment, entropy, and average proportion.

Usage

add_prune(node, min_average_proportion = 0.001, theta = 0)

Arguments

node: The node to process.
min_average_proportion: The minimum average proportion required to not prune a node.
theta: The threshold added to the current enrichment for comparison.

Value

The node with prune markers added.

See also

Other GatingTree: ExtractGatingTree(), GatingTreeToDF(), PlotDeltaEnrichment(), PlotDeltaEnrichmentPrunedTree(), PruneGatingTree(), addChildNode(), apply_gating_conditions(), baseline_entropy(), calculate_enrichment(), calculate_entropy(), collect_all_enrichment(), collect_all_entropy(), collect_history(), collect_leaf_enrichment(), collect_markers(), count_nodes(), createChildNode(), createGatingTreeObject(), findNodeByPath(), find_and_update_nodes(), gating_entropy(), general_node_rule(), generate_marker_names(), getNode(), prune_tree(), recursiveAddChildNode(), update_nodes_by_paths()

Examples

if (FALSE) { # \dontrun{
  node <- add_prune(node, 0.001, 0.02)
} # }