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Generate Concatenated Marker Names Based on States

Source: R/createGatingTreeObject.r
generate_marker_names.Rd

Constructs a string that represents a combination of markers and their states (negative or positive). This function appends ".neg" or ".pos" to each marker based on the state provided in `marker_states`. The function returns a single string with these names concatenated, separated by underscores. If no markers are specified as included (non-empty), it returns "all_unassigned".

Usage

generate_marker_names(marker_states, markers)

Arguments

marker_states

A numeric vector indicating the state of each marker where 1 represents negative (".neg") and 2 represents positive (".pos").

markers

A character vector of marker names corresponding to the states in `marker_states`.

Value

A character string of concatenated marker names with their states. If no markers are specified, returns "all_unassigned".

See also

Other GatingTree: ExtractGatingTree(), GatingTreeToDF(), PlotDeltaEnrichment(), PlotDeltaEnrichmentPrunedTree(), PruneGatingTree(), addChildNode(), add_prune(), apply_gating_conditions(), baseline_entropy(), calculate_enrichment(), calculate_entropy(), collect_all_enrichment(), collect_all_entropy(), collect_history(), collect_leaf_enrichment(), collect_markers(), count_nodes(), createChildNode(), createGatingTreeObject(), findNodeByPath(), find_and_update_nodes(), gating_entropy(), general_node_rule(), getNode(), prune_tree(), recursiveAddChildNode(), update_nodes_by_paths()

Examples

if (FALSE) { # \dontrun{
markers <- c("CD4", "CD8", "CD19")
states <- c(1, 2, 0)  # CD4.neg, CD8.pos, CD19 not included
generate_marker_names(states, markers)
} # }